But the United States also imposed sanctions on Iran's Atomic Energy Organisation (AEOI) and its chief, a move the Iranian entity's spokesman described as a sign of Washington's "despair."
The Trump administration, which in 2018 pulled out of the 2015 Iran nuclear deal and reimposed sanctions on Iran, will let the work go forward by issuing waivers to sanctions that bar non-US firms from dealing with the AEOI.
The waivers’ renewal for 60 days will allow nonproliferation work to continue at the Arak heavy-water research reactor, the Bushehr nuclear power plant, the Tehran Research Reactor and other nuclear cooperation initiatives.
Tehran has rejected Western assertions that it has sought to develop nuclear weapons, and on Thursday AEOI spokesman Behrouz Kamalvandi reaffirmed that Iran's civilian nuclear program will continue "full force."
"Imposing sanctions ... is a political game played by Washington. These sanctions have no value and are childish measures," Kamalvandi told Iran's Fars news agency.
Leading Republican senators and other Iran hawks had lobbied intensively to stop the latest waivers as US President Donald Trump seeks to exert more pressure on Iran after the two longtime foes came toward the brink of war earlier this month.
"We will closely monitor all developments in Iran's nuclear program and Secretary (Mike) Pompeo can end these projects as developments warrant," Brian Hook, US special representative for Iran, told a news briefing.
Republican Senator Marco Rubio expressed discontent with the waiver renewal.
"While I am glad to see new sanctions imposed against Iran’s Atomic Energy Organization and its chief, the administration should terminate the controversial sanctions waivers on Iran’s civil nuclear program and exert maximum pressure on the regime in Tehran," Rubio said in a statement.
The waivers are a rare breather in a hardened US policy toward Iran. The latest development follows weeks of extreme tension after Washington killed top Iranian general Qassem Soleimani and Iran retaliated with a missile strike on bases in Iraq housing US troops.
Under the 2015 deal between Iran and six world powers - Britain, China, France, Germany, Russia and the United States - Tehran agreed to limit its nuclear program in return for the lifting of economic sanctions that had crippled its economy.
Trump unilaterally abandoned the deal in May 2018, and reimposed US sanctions in a “maximum pressure” campaign designed to force Iran to return to the negotiating table.
Washington in November terminated the sanctions waiver related to Iran’s Fordow nuclear plant after Tehran resumed uranium enrichment at the underground site.
"There was a difference of opinion between the US Treasury and State Department. The Treasury won," a Western diplomat said. "There is an appetite for more sanctions, so this was a surprise; but others argue that these waivers are vital to ensure nonproliferation."
MORE SANCTIONS
The United States on Thursday placed Ali Akbar Salehi, head of the AEOI, and the organization itself under US sanctions, Hook said.
The decision to sanction Salehi and the AEOI would have an impact on Iran's civilian nuclear program because it has operational control over the program, including purchasing parts for nuclear facilities.
Last week three Republican senators known to be close to Trump - Tom Cotton of Arkansas, Ted Cruz of Texas and Lindsey Graham of South Carolina - had called for the remaining civil nuclear waivers to be rescinded.
"Enough is enough," the senators and Republican US congresswoman Liz Cheney said in a joint statement.
The diplomat said the United States had likely opted to extend the Bushehr waiver because the Russian company targeted also provides nuclear fuel to US facilities, causing a potential sanctions headache for the administration.