The charges were read as Saeed was present in the court, Abdur Rauf told Reuters.
Saeed is the founder of Lashkar-e-Taiba (LeT), or the Army of the Pure, a militant group blamed by the United States and India for the four-day Mumbai siege, in which 160 people were killed. The dead also included several foreigners, including Americans.
Pakistan's counter terrorism police arrested Saeed in July. The indictment came ahead of a world financial watchdog meeting early next year to decide whether to blacklist Pakistan on failure to curb terror financing.