During this evening's riots, a 12-year-old suspect who endangered the forces by firing fireworks at them was shot by a security personnel, the police said.
Channel 12 reported the riots broke out after a Gazan teen was shot dead by Hamas policemen while attempting to gather humanitarian aid.
More than two dozen police officers rushed the teacher into an empty office and locked the door, at which point a student mob gathered outside and tried to force its way in.
But while there have not been any incidents of note between Arabs and Jews, seven Arabs were still murdered in the last two weeks in crime-related incidents.
The IDF shut down a Palestinian command center in the nearby Balata refugee camp after the visits to Joseph's Tomb.
Earlier on Saturday, a demonstration was held on the shores of the Gaza Strip as protesters staged a flotilla calling for an end to Israel's blockade of the Strip.
During the arrest of a suspect in Hebron, Israeli forces seized an airsoft rifle and dozens of 5.56 caliber cartridges and shotgun shells, according to photographs published by the military.
Thousands of Gazans with work permits have been unable to enter Israel.
If Hamas was seemingly scared of escalating before, why are they comfortable escalating now, in the middle of the High Holy Days, one of the most sensitive periods of the year?
A budget of over NIS 30 million will be allocated to deal with "infiltrators" following violent Eritrean riots in south Tel Aviv.